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Read e-book online Computational and statistical approaches to genomics PDF

By Wei Zhang; Ilya Shmulevich

ISBN-10: 0306478250

ISBN-13: 9780306478253

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Extra resources for Computational and statistical approaches to genomics

Example text

The latter component is called ‘evenness’ in the ecological literature, and several measures of evenness have been proposed (see Tuomisto, 2012). Here, however, we are interested in indices of species diversity that simultaneously capture richness and evenness. Not surprisingly, there exist several indices of species diversity. Maurer and McGill (2011) provide a detailed account of the history and theory behind these various measures. Two of them, the Simpson diversity index and the Shannon diversity index, are among the oldest and most widely used.

Eds), Biological Diversity: Frontiers in Measurement and Assessment. Oxford: Oxford University Press, pp. 55–65. Quantifying parasite diversity 25 Morand, S. (2000). Wormy world: comparative tests of theoretical hypotheses on parasite species richness. , Morand, S. & Skorping, A. (eds), Evolutionary Biology of Host– Parasite Relationships: Theory Meets Reality. Amsterdam: Elsevier Science, pp. 63–79. , George-Nascimento, M. & Poulin, R. (2003). How parasites divide resources: a test of the niche apportionment hypothesis.

Tangled Trees: Phylogeny, Cospeciation and Coevolution. Chicago, IL: University of Chicago Press, pp. 310–342. Combes, C. (2001). Parasitism: The Ecology and Evolution of Intimate Interactions. Chicago, IL: University of Chicago Press. Durrer, S. (1996). Parasite load and assemblages of bumblebee species. Unpublished PhD thesis. Swiss Federal Institute of Technology, Department of Environmental Sciences. Felsenstein, J. (1985) Phylogenies and the comparative method. American Naturalist, 125, 1–15.

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Computational and statistical approaches to genomics by Wei Zhang; Ilya Shmulevich

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